Hi,
I have a problem with MIRA 4 assembly denovo using reads in fastq format come from ion Torrent technology.
my manifest file is:
project = pDG2
job = denovo
readgroup = lab
data = fastapDG.fastq
technology = iontor
the code used is:
MIRA works for 10 minutes and afterward the process aborted. This is the last sentence:
I would like having some suggestion to understand where could be my error..
The MIRA result folder is empty and the MIRA info folder contains only 3 warning txt files, of 0 byte each one, called:
pDG2_info_WARNINGS_critical (empty)
pDG2_info_WARNINGS_medium (empty)
pDG2_info_WARNINGS_minor (empty)
pDG2_info_readrepeats.lst (this file contains the read list 119Mb)
I don't know if these informations are enough.
Can I ask also if other programs could sostituite MIRA for this kind of assembling?
I have a problem with MIRA 4 assembly denovo using reads in fastq format come from ion Torrent technology.
my manifest file is:
project = pDG2
job = denovo
readgroup = lab
data = fastapDG.fastq
technology = iontor
the code used is:
Code:
mira manifest.conf>log_assemb5.txt
HTML Code:
Filtering forward skims. Localtime: Tue Feb 10 10:46:50 2015 Writing reduced skim file: [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.... [80%] ....|.... [90%] . Failure, wrapped MIRA process aborted.
The MIRA result folder is empty and the MIRA info folder contains only 3 warning txt files, of 0 byte each one, called:
pDG2_info_WARNINGS_critical (empty)
pDG2_info_WARNINGS_medium (empty)
pDG2_info_WARNINGS_minor (empty)
pDG2_info_readrepeats.lst (this file contains the read list 119Mb)
I don't know if these informations are enough.
Can I ask also if other programs could sostituite MIRA for this kind of assembling?
Comment