by fabio
hi zee
thanks for your answer. I was thinking like you at the beginning and so I took the track in the USCS browser and I brought it galaxy. If you do that with a bed file already present in the USCS browser it worked fantastically, but since that the wiz file is in compressed format, Galaxy didn't allow me to do the same actions. I tried to intersect my track with the info in the USCS browser, in order to include more informations in the file, but it still didn't work. And so, I thought that probably there are better ways how to deal this problem. That's why I'm asking to everybody how they analyze the data and if there is any comprehensive suite available to deal with such data.
The other point is that I got them already analyzed and I would like to learn how to preprocess & analyze them. Probably I'm trying to do too many things in one time and I'm getting confused.
hi zee
thanks for your answer. I was thinking like you at the beginning and so I took the track in the USCS browser and I brought it galaxy. If you do that with a bed file already present in the USCS browser it worked fantastically, but since that the wiz file is in compressed format, Galaxy didn't allow me to do the same actions. I tried to intersect my track with the info in the USCS browser, in order to include more informations in the file, but it still didn't work. And so, I thought that probably there are better ways how to deal this problem. That's why I'm asking to everybody how they analyze the data and if there is any comprehensive suite available to deal with such data.
The other point is that I got them already analyzed and I would like to learn how to preprocess & analyze them. Probably I'm trying to do too many things in one time and I'm getting confused.
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