Dear all,
I was running the command bwa index fungi, in a folder where I have:
fungi (54GB)
fungi.1 (11bb)
fungi.2 (10gb)
fungi.3 (10gb)
fungi.4 (10gb)
fungi.5 (10gb)
fungi.6 (2.6gb)
And after more than 24h I got the following error:
[bwa_index] Update BWT... [bwt_bwtupdate_core] Failed to allocate 53136247452 bytes at bwtindex.c line 158: Cannot allocate memory
I was running the same command with other file (for bacteria) and I have a total of 4TB of memory.
I searched for solutions in several forums but any answer was clear to me, if allocating more memory is necessary I don't know how to do it.
Please could you tell me any commands I should use to solve this?
Thanks !
I was running the command bwa index fungi, in a folder where I have:
fungi (54GB)
fungi.1 (11bb)
fungi.2 (10gb)
fungi.3 (10gb)
fungi.4 (10gb)
fungi.5 (10gb)
fungi.6 (2.6gb)
And after more than 24h I got the following error:
[bwa_index] Update BWT... [bwt_bwtupdate_core] Failed to allocate 53136247452 bytes at bwtindex.c line 158: Cannot allocate memory
I was running the same command with other file (for bacteria) and I have a total of 4TB of memory.
I searched for solutions in several forums but any answer was clear to me, if allocating more memory is necessary I don't know how to do it.
Please could you tell me any commands I should use to solve this?
Thanks !
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