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  • Gatk

    how to install GATK through terminal in ubuntu?

  • #2
    The GATK distribution is a jar file, it should run if you have java installed.

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    • #3
      The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.php

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      • #4
        Gatk

        can i input .sam file to GATK in linux??

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        • #5
          GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?
          Last edited by vivek_; 01-25-2017, 05:35 AM.

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          • #6
            Originally posted by vivek_ View Post
            GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?
            But reading is hard and takes time, therefore it's easier to just ask people who volunteer online to help and waste their time instead.

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            • #7
              error while running

              when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the tool

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