Hi everyone,
I'm looking for a multiple genome aligner that outputs a file containing all the positions of the SNPs. I've tried using Mauve, but their commandline tool doesn't output the SNP positions, and I don't want to use their GUI because it needs to be automated.
Does anyone know what software I should use?
Thanks in advance.
I'm looking for a multiple genome aligner that outputs a file containing all the positions of the SNPs. I've tried using Mauve, but their commandline tool doesn't output the SNP positions, and I don't want to use their GUI because it needs to be automated.
Does anyone know what software I should use?
Thanks in advance.