Hi Valentina,
I'm sorry - I didn't get your message, I would have replied sooner if I had known you'd asked a question!
If sounds like you're trying to use the FindPeaks 3.2 instructions on FindPeaks 3.1. While there are a lot of similarities, FindPeaks 3.1 doesn't handle .map files or have the expandable parameters for -dist_type 1.
To get FindPeaks 3.2, you might have to wait a day or two for a pre-compiled jar file (It's my plan to work on it tomorrow), or if you're impatient, there are instructions in the wiki at http://vancouvershortr.wiki.sourceforge.net
Anthony
I'm sorry - I didn't get your message, I would have replied sooner if I had known you'd asked a question!
If sounds like you're trying to use the FindPeaks 3.2 instructions on FindPeaks 3.1. While there are a lot of similarities, FindPeaks 3.1 doesn't handle .map files or have the expandable parameters for -dist_type 1.
To get FindPeaks 3.2, you might have to wait a day or two for a pre-compiled jar file (It's my plan to work on it tomorrow), or if you're impatient, there are instructions in the wiki at http://vancouvershortr.wiki.sourceforge.net
Anthony
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