Hello,
I have been given a list the names of organisms whose genomes are stores with NCBI. I have been able to grab the "Project Accession" for each of these names using the NCBI "Entrez Direct" following command:
esearch -db genome -query "Acidothermus cellulolyticus" | efetch -format docsum
Which was a start, but this does not enable me to download the FASTA, which I would like. The Project Accession is associated with numerous genomes and I'm OK with downloading all the genomes within a given project. However, I cannot figure out which command will perform that download.
Any help would be greatly appreciated (even in a totally different approach to go from genome name to data).
Thanks
I have been given a list the names of organisms whose genomes are stores with NCBI. I have been able to grab the "Project Accession" for each of these names using the NCBI "Entrez Direct" following command:
esearch -db genome -query "Acidothermus cellulolyticus" | efetch -format docsum
Which was a start, but this does not enable me to download the FASTA, which I would like. The Project Accession is associated with numerous genomes and I'm OK with downloading all the genomes within a given project. However, I cannot figure out which command will perform that download.
Any help would be greatly appreciated (even in a totally different approach to go from genome name to data).
Thanks
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