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“Focus on a Feature: RNA-Seq Alignment and Visualization using Galaxy and IGB.”
This Focus on a Feature has finished. The recording can be found here.
The complete Galaxy history can be found here.
Program:
1. Introduction to Galaxy
2. Finding and loading data sets from the Sequence Read Archive
3. Quality checking and grooming of NGS data.
4. Aligning NGS RNA-Seq data.
5. Visualizing RNA-Seq alignments in IGB
Integrated Genome Browser (IGB)
IGB is a highly interactive, fast, and easy to use desktop genome browser, which is used to view and interact with sequence data from reference genomes, gene models, and alignments. Common data sets include RNA-Seq, ChIP-Seq, and other genome-scale projects. IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.
If you have questions or need assistance, contact us at:
Nowlan Freese [email protected]
Ann Loraine [email protected]
To download and start IGB, go to bioviz.org and select the "Download Now" link. Once IGB starts, choose Help / Tutorials for a quick introduction to IGB.
This Focus on a Feature has finished. The recording can be found here.
The complete Galaxy history can be found here.
Program:
1. Introduction to Galaxy
2. Finding and loading data sets from the Sequence Read Archive
3. Quality checking and grooming of NGS data.
4. Aligning NGS RNA-Seq data.
5. Visualizing RNA-Seq alignments in IGB
Integrated Genome Browser (IGB)
IGB is a highly interactive, fast, and easy to use desktop genome browser, which is used to view and interact with sequence data from reference genomes, gene models, and alignments. Common data sets include RNA-Seq, ChIP-Seq, and other genome-scale projects. IGB can be used to produce publication quality images from genome scale data sets, and is provided FREE.
If you have questions or need assistance, contact us at:
Nowlan Freese [email protected]
Ann Loraine [email protected]
To download and start IGB, go to bioviz.org and select the "Download Now" link. Once IGB starts, choose Help / Tutorials for a quick introduction to IGB.
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