Hi !
I'm working on an hybrid de novo assembly of a 2 Giga bases genome using Pacbio and illumina Paired End reads.
I would like then to validate my assembly and do some controls such as detecting collapsed repeats, misassemblies and improve the consensus accuracy.
So could you please say me which is the best tool that can do that and is suitable for large genomes like mine.
I'm working on an hybrid de novo assembly of a 2 Giga bases genome using Pacbio and illumina Paired End reads.
I would like then to validate my assembly and do some controls such as detecting collapsed repeats, misassemblies and improve the consensus accuracy.
So could you please say me which is the best tool that can do that and is suitable for large genomes like mine.
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