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Old 08-28-2013, 03:20 AM   #1
Location: Switzerland

Join Date: Aug 2013
Posts: 41
Default Scaffold evaluation measures


I want to compare the scaffolding of different assemblies and looking for good measures to evaluate the quality.
  1. N 50
  2. NG 50
  3. Blastx and evaluate how many align
  4. ...

Was my previous approach, now I am seeking new ones. The biggest obstacle using other methods of evaluation often is the lack of a reference genome in my case.

Any good suggestions ?
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Old 08-29-2013, 03:37 AM   #2
Location: Oslo, Norway

Join Date: Nov 2008
Posts: 415

Have a look here: More are appearing in the literature all the time...
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