Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Introducing BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries Brian Bushnell Bioinformatics 64 03-28-2020 04:54 AM
Several questions regarding BBMap/BBSplit MSchm Bioinformatics 2 12-18-2017 11:01 AM
gff statistics Amative Bioinformatics 0 09-25-2013 08:37 AM
what statistics and tool to use? vebaev Bioinformatics 16 08-19-2011 01:37 AM
Statistics for Biologists Events / Conferences 0 06-07-2010 07:41 AM

Thread Tools
Old 04-29-2018, 07:56 AM   #1
Junior Member
Location: Taipei

Join Date: Apr 2017
Posts: 3
Question BBSplit result statistics

I use to run my analysis as following:
./bbmap/ in1=R1_001_bc_prefix.fastq.gz  in2=R2_001_bc_prefix.fastq.gz  ref=hg19.fa,mm10.fa  basename=out_%.bam threads=4  ambig2=best
I want to know the mapping quality of the result. How can I access it?

s18692001 is offline   Reply With Quote
Old 04-29-2018, 04:54 PM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,088

Cross-posted on Biostars:
GenoMax is offline   Reply With Quote

bbmap, bbsplit, quality check

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:47 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO