Hi all,
I have Whole Genome Shotgun Reads (Illumina) of a mammalian species. I am interested in filtering out all the reads matching mitochondrial DNA before starting the downstream analysis. I know the right thing is to blast them or map them against mtDNA. But, Do anyone knows about available software or scripts to do this? I would like to know if there are tools for it before writing the code myself.
Cheers,
Fernando
I have Whole Genome Shotgun Reads (Illumina) of a mammalian species. I am interested in filtering out all the reads matching mitochondrial DNA before starting the downstream analysis. I know the right thing is to blast them or map them against mtDNA. But, Do anyone knows about available software or scripts to do this? I would like to know if there are tools for it before writing the code myself.
Cheers,
Fernando
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