Hi,
I've just found out that tophat's --min-isoform-fraction option has been disabled (commented out) somewhere between v1.0.10 and v1.0.13.
I quickly searched the forum and the web, but couldn't find any post about that. Could anybody explain why this option was taken out?
> diff /tophat-1.0.10/src/junctions.cpp /tophat-1.0.13/src/junctions.cpp
...
202,206c183,187
...
Thanks in advance,
Jin
I've just found out that tophat's --min-isoform-fraction option has been disabled (commented out) somewhere between v1.0.10 and v1.0.13.
I quickly searched the forum and the web, but couldn't find any post about that. Could anybody explain why this option was taken out?
> diff /tophat-1.0.10/src/junctions.cpp /tophat-1.0.13/src/junctions.cpp
...
202,206c183,187
Code:
< if (s.supporting_hits.size() / avg_junc_doc < min_isoform_fraction) < { < s.accepted = false; < } < else --- > // if (s.supporting_hits / avg_junc_doc < min_isoform_fraction) > // { > // s.accepted = false; > // } > // else
Thanks in advance,
Jin