[SOAPdenovo] used and unused reads

[syintel87]

Hello, I am using SOAPdenovo program.
I'd like to know how many reads were used and unused in denovo assembly.
When looking into "scafStatistics" file, I have no idea about how to extract those information.

The code that I used is,
SOAPdenovo-127mer all -s input.config -K 127 -o output -V >rec.out

The parameters set in "input.config" are,
max_rd_len=300
avg_ins=50
[LIB]
reverse_seq=0
asm_flags=3
rank=1
pair_num_cutoff=3
map_len=32
q1=chwd_R1.fastq
q2=chwd_R2.fastq 

Thanks in advance.

[RyNkA]

If you generate the log file during the assembly process you might find out that kind of infos

8 thread created
read from file:
final_cf.fq
--- 100000000th reads
161960020 reads processed
time 161,228,614,110,11,32,0
0 markers outputed
done mapping reads, 13791305 reads deleted, 18214722 arcs created

If you run the assembly using a cluster, just type

2>&1 > soap.log

in the end of the command for the log file