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Old 08-12-2014, 12:09 PM   #1
dingxm
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Location: la

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Default a question about multiple samples SNP calling using samtools

I am using samtools to perform SNP calling of 48 samples. After i got the vcf file, I found the read depth of some samples is 0, but i still got the genotype of these samples. How did samtools get the genotype of position where the read depth is 0. Are these genotypes reliable?
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