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Old 10-15-2018, 06:00 AM   #1
rnaNGS
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Location: China

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Default CLIP-seq database: PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, irCLIP for RBP binding sites

Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking (CLIP-Seq) provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.

starBase v3.0 CLIP-seq database provides more than 700 CLIP-seq data from 203 RNA-binding proteins(RBPs). The CLIP technologies contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, uvCLIP, etc.

starBase v3.0 is the first platform to visualize the binding motifs of RBPs by de novo analyzing the CLIP-seq data and provides genomic coordinates of identified RBPs binding motifs across different cell types, tissues and conditions.

All CLIP-seq datasets is freely available at
http://starbase.sysu.edu.cn/download.php

All RBP motifs is freely available at http://starbase.sysu.edu.cn/rbpMotif.php

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