Hi guys,
is anybody use tophat-fusion?
I use 'tophatfusion-0.1.0-OSX_x86_64' ran my RNA-seq data get some error like:
Traceback (most recent call last):
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2611, in <module>
sys.exit(main())
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2567, in main
user_supplied_deletions)
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2252, in spliced_alignment
left_reads_map = maps[left_reads].unspliced_bwt
AttributeError: 'list' object has no attribute 'unspliced_bwt'
The command I used is :
'tophat-fusion -o output --segment-length 20 --solexa1.3-quals Myco s_2_sequence.fastq'
is anybody know how to fix it?
Thanks a million.
is anybody use tophat-fusion?
I use 'tophatfusion-0.1.0-OSX_x86_64' ran my RNA-seq data get some error like:
Traceback (most recent call last):
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2611, in <module>
sys.exit(main())
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2567, in main
user_supplied_deletions)
File "/Users/ptong/Downloads/tophatfusion-0.1.0-OSX_x86_64/tophat-fusion", line 2252, in spliced_alignment
left_reads_map = maps[left_reads].unspliced_bwt
AttributeError: 'list' object has no attribute 'unspliced_bwt'
The command I used is :
'tophat-fusion -o output --segment-length 20 --solexa1.3-quals Myco s_2_sequence.fastq'
is anybody know how to fix it?
Thanks a million.
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