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Old 09-03-2012, 06:35 AM   #1
ramyaniv
Junior Member
 
Location: israel

Join Date: Sep 2012
Posts: 1
Talking Small RNA analysis output files

Hi,
I an new to solid and lifescope.
i performed a small RNA analysis with two xsq input files.
i have two questions:
1. after days, when i go to the project and type 'ls' (it's suppose to show me the status of the analysis), i see this:

server:/projects/smallrna1/run1> ls
--ini--
secondary/bamstats.ini
secondary/global.ini
secondary/smallrnamapping.ini
tertiary/filtermapping.counts.ini
tertiary/global.ini
tertiary/srCount.ini
tertiary/srCoverage.ini

--readsets--(group:file:index:library_name:reference)
Group_1:SOLiD_2012_06_12_1_01_74_rachel.xsq:1:74_rachel:human_hg18.fa

--jobs--
run1 [21%] [JOB_RUNNING]
secondary-hg18-smallrnamapping [100%] [JOB_SUCCESS]
secondary-hg18-bamstats [5%] [JOB_RUNNING]
tertiary-Group_1-srCount [0%] [JOB_NOTSTARTED]
tertiary-Group_1-srCoverage [0%] [JOB_NOTSTARTED]
tertiary-Group_1-filtermapping.counts [0%] [JOB_NOTSTARTED]

why is the banstats stuck on 5%?

2. where should i look for the output files (bam files, right)?

Thank you!
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