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Old 10-14-2012, 06:29 AM   #1
yoyoming1001
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Default BaseSpace: How do you run an app after the run is complete?

First time uploading to Basespace. Only generated FastQ's at first but now want to align it. There doesn't seem to be an option. Is it even possible?
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Old 10-14-2012, 11:30 AM   #2
epistatic
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Currently runs cannot be requeued for analysis, I have to rerun analysis using MiSeq reporter locally. You can also ask nicely and see if a dev will alter sample sheet for your chosen application and requeue analysis. I hope they allow rerunning analysis soon, if you have an error with your sample sheet you have to get Illumina devs to fix and restart analysis or have a forever "failed" run in BaseSpace.
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Old 10-14-2012, 12:06 PM   #3
yoyoming1001
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Yep, that's what I figured. Not a huge deal but kind of annoying. The main point of BaseSpace is to be able to manipulate data in the cloud. I guess I can't get too angry because it is still in beta testing, and it looks like this kind of thing will be available when they roll out the app store ~ the end of Nov it seems.

Thanks for the reply epistatic.

Last edited by yoyoming1001; 10-14-2012 at 12:09 PM.
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