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Old 11-30-2012, 10:10 PM   #1
Location: USA

Join Date: Sep 2012
Posts: 22
Default Tools to remove duplicate reads

Hello, is there anyone aware of the difference in remove duplicate reads by using different tools. For example, the number of duplicate reads removed by cd-hit-454 and PRINSEQ is much different. Thanks.
fanx is offline   Reply With Quote
Old 11-30-2012, 11:55 PM   #2
Location: china

Join Date: Dec 2011
Posts: 48

you may try Picard to do this
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Old 01-29-2013, 11:36 AM   #4
Location: Durham, NC

Join Date: Apr 2012
Posts: 21

Can somebody show how pickard does duplicate markups and how you can remove them? I can't seem to find the markings....?

naragam is offline   Reply With Quote

duplicate reads

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