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Old 12-14-2015, 04:57 AM   #1
heso
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Default combining multiple fastqc output files

Hi,

I'm trying to combine several FastQC results files to create one overview file.

I found a script for this as well, but have no idea how to access that:
http://msi-riss.readthedocs.org/en/l...ml#fasterqc-pl

Can anybody help me out in here?
Other useful tips are of course also welcome.

Thank you in advance!
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Old 12-14-2015, 05:04 AM   #2
GenoMax
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Did you see the "Description" on the page you linked? It tells you how to run the script. That said RISS_util utility package appears to be developed by Minnesota Super-computing Institute and perhaps it is for internal use only on their cluster (as far as I can tell).

You may want to take a look at MultiQC (http://seqanswers.com/forums/showthread.php?t=64136) though it may not do exactly what the script you linked to originally does.

Last edited by GenoMax; 12-17-2015 at 03:47 AM.
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Old 12-17-2015, 03:44 AM   #3
heso
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Thanks a lot. MultiQC had the features I was looking for.
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