Go Back   SEQanswers > Sequencing Technologies/Companies > Illumina/Solexa

Similar Threads
Thread Thread Starter Forum Replies Last Post
combining fastq files mmmm Bioinformatics 9 02-21-2014 02:54 AM
FASTQC setting for multiple casava fastq files? hmortens Bioinformatics 2 10-28-2013 07:30 AM
Multiple NGS Platform and combining data Strider Bioinformatics 1 11-17-2012 04:00 PM
Combining multiple Trinity assemblies? yeaman Bioinformatics 2 12-08-2011 04:30 PM
cuffdiff0.9.2: output problem when input multiple SAM files mrfox Bioinformatics 0 11-22-2010 07:53 AM

Thread Tools
Old 12-14-2015, 04:57 AM   #1
Location: Sweden

Join Date: May 2014
Posts: 19
Default combining multiple fastqc output files


I'm trying to combine several FastQC results files to create one overview file.

I found a script for this as well, but have no idea how to access that:

Can anybody help me out in here?
Other useful tips are of course also welcome.

Thank you in advance!
heso is offline   Reply With Quote
Old 12-14-2015, 05:04 AM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 7,077

Did you see the "Description" on the page you linked? It tells you how to run the script. That said RISS_util utility package appears to be developed by Minnesota Super-computing Institute and perhaps it is for internal use only on their cluster (as far as I can tell).

You may want to take a look at MultiQC ( though it may not do exactly what the script you linked to originally does.

Last edited by GenoMax; 12-17-2015 at 03:47 AM.
GenoMax is offline   Reply With Quote
Old 12-17-2015, 03:44 AM   #3
Location: Sweden

Join Date: May 2014
Posts: 19

Thanks a lot. MultiQC had the features I was looking for.
heso is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:47 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO