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A multi-split mapping algorithm for circular RNA, splicing, trans-splicing, and ... ecSeq Bioinformatics Bioinformatics 26 01-04-2016 12:05 AM

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Old 10-05-2016, 01:32 AM   #1
SylvainL
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Location: Geneva

Join Date: Feb 2012
Posts: 179
Default Best tool to look for alterntive splicing

Dear all,

I would like to know which tools you use when you want to look for alternative splicing events.
Some goodies I am particularly looking for:
- works with either single or paired-end data
- possibility to discover new junctions (not only reference-based)
- possibility to quantify the events with pairing between samples (not only by group but also by treatments, sequencing dates, etc...)

I saw few but none has all of this (particularly the pairing analysis), so I am asking the community

Thanks in advance

Sylvain

Last edited by SylvainL; 10-05-2016 at 01:35 AM.
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