Hey guys
I have a .sam file from bowtie2 and I want to see if there is a high number of reads mapped on intronic sequences..
What is the fastest solution? I planned to visualize the alignment in comparison to a gff file.
But it seems to be very labourous. So, is there a tool that has a table as output where I can see how many reads are mapped to introns?
I have a .sam file from bowtie2 and I want to see if there is a high number of reads mapped on intronic sequences..
What is the fastest solution? I planned to visualize the alignment in comparison to a gff file.
But it seems to be very labourous. So, is there a tool that has a table as output where I can see how many reads are mapped to introns?
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