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Hello everyone.
I'm trying to assemble a transcriptome with different assembly programs and with different k-mer sizes.
I've got both single- and paired-end reads and, to my understanding, both Velvet and Trinity can perform the assembly with this kind of libraries.
Velvet:
Trinity: concatenating the single-end reads to the R1 of the paired reads.
Does anybody knows how to proceed with this kind of assembly in SoapDenovo-trans? There is some information about Soapdenovo2 in the same page where the Velvet information is found, but I don't know if it would be applicable for the -Trans version.
Thank you for your time.
I'm trying to assemble a transcriptome with different assembly programs and with different k-mer sizes.
I've got both single- and paired-end reads and, to my understanding, both Velvet and Trinity can perform the assembly with this kind of libraries.
Velvet:
Trinity: concatenating the single-end reads to the R1 of the paired reads.
Does anybody knows how to proceed with this kind of assembly in SoapDenovo-trans? There is some information about Soapdenovo2 in the same page where the Velvet information is found, but I don't know if it would be applicable for the -Trans version.
Thank you for your time.