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Old 10-01-2018, 08:26 PM   #1
capricy
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Default SVA batch removal for 4 treatments at different time points prior to DEseq2 analysis

Hello,

I have RNA-seq data from 4 tissues, A, B, C, and D. The problem is that we sequenced A and B in 2015 and then C and D in 2016. If I would like to call the differentially expressed genes among those 4 samples, may I use SVAseq to remove batch effect introduced by time prior to the DEseq2 pipeline?

Thanks.

C.

Last edited by capricy; 10-01-2018 at 09:04 PM.
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