SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
MinIon Datasets alireza.h Bioinformatics 2 09-28-2018 12:49 PM
where to get aligned datasets ? gsgs Bioinformatics 6 11-26-2015 08:22 AM
vcf compare LilianK Bioinformatics 0 12-24-2013 03:49 AM
MAQC II datasets gcsaa RNA Sequencing 0 10-12-2012 11:21 AM
distance measure to compare peak set profiles in chip-seq datasets avilella Bioinformatics 0 03-18-2010 02:01 AM

Reply
 
Thread Tools
Old 04-29-2020, 04:52 AM   #1
sylvainmonnier
Junior Member
 
Location: Suisse

Join Date: Apr 2020
Posts: 1
Default How to compare two datasets

dears,
I'm new in this community.
I have to compare 2 differents RNA-SEQ datasets (whole transcriptome sequencing by Illumina). Samples are prepared by the same way (PAXGene tube and same extraction system), but 1 dataset have been done by strand protocol with ribo depletion and polyA selection ; and the other dataset have been done by standard protocol and ribo depletion but no polyA enrichement.
Do you think it's possible to find a way to "compare" these data? We try to find robust list of housekeeping genes, what we you think and is there a list existing to us?
For 1 dataset (the first one) we have sequenced UHRR reference RNA.

Thank to help me!
sylvainmonnier is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:28 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO