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Old 12-26-2010, 11:19 PM   #1
Junior Member
Location: whole transcriptome

Join Date: Oct 2010
Posts: 8
Default Optimal k-mer and N50?


I am a new hand for De novo discovery, I find Velvet and ABySS require K-mers, I have single-end SOLiD data and think to know how to get optimal k-mer and N50.

Can everyone give me some paper for K-mer or N50?

Thanks for any comments in advance.
I am looking forward to your letter
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Old 12-28-2010, 10:03 AM   #2
(Jeremy Leipzig)
Location: Philadelphia, PA

Join Date: May 2009
Posts: 116

there are a ton of links here.

please do some research and come back with a precise question.
Jeremy Leipzig
Bioinformatics Programmer
My blog
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