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Old 04-07-2014, 09:58 AM   #1
Location: germany

Join Date: Jun 2012
Posts: 32
Default Adapter trimming


I have got the adapter sequences from company as for Illumina RNA seq data:

(ID #1 "ATCACG" )

Will this be my adapter sequences to trim it using trimmomatic?

or I have to reverse complement the adapter ?

Best Regards
figo1019 is offline   Reply With Quote
Old 04-07-2014, 10:58 AM   #2
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Location: uk

Join Date: Mar 2009
Posts: 665

Have a look at the TruSeq adapter files that come with trimmomatic,
and see how they compare to the sequences you have.
mastal is offline   Reply With Quote

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