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Old 03-01-2016, 12:10 PM   #1
Rahul shelke
Junior Member
Location: Guwahati,India

Join Date: Mar 2015
Posts: 8
Default Soapdenovo trans

A) After assembling scaffolds from the trimmed and quality filter reads, I am getting the following ratio Average_number_of_contigs_per_scaffold :-1.0

B) For the untrimmed raw reads.... Average_number_of_contigs_per_scaffold :-1.2-1.4

C) Assembly in published paper showing around... Average_number_of_contigs_per_scaffold :-1.9

I don't know whether the problem in my scaffolds is due to input reads or else.....?

Any suggestion will be highly appreciated...
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fastx toolkit, scaffolding, soapdenovo-trans

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