Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Introducing BBDuk: Adapter/Quality Trimming and Filtering Brian Bushnell Bioinformatics 347 10-14-2021 02:02 AM
Quality-, adapter- and RRBS-trimming with Trim Galore! fkrueger Bioinformatics 138 11-12-2020 04:58 PM
How do you specify error rate in BBduk adapter trimming? antifolate Bioinformatics 11 07-07-2016 04:00 PM
Adapter trimming with BBduk PeatMaster Illumina/Solexa 4 04-01-2016 12:18 PM
Adapter trimming and trimming by quality question alisrpp Bioinformatics 5 04-08-2013 05:55 PM

Thread Tools
Old 10-31-2019, 04:12 PM   #1
Junior Member
Location: us

Join Date: May 2011
Posts: 8
Default Comparing bbduk with fastp for quality and adapter trimming


Has anyone compared results and performance of bbduk vs fastp when it comes to adapter and quality trimming of fastq read files?

I realize fastp will work without providing any adapter files.

I would appreciate any pointers on this and I am specifically looking for bbduk vs fastp.

Thanks in advance,
tamu_anand is offline   Reply With Quote

bbduk, fastp, trimming reads

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:58 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO