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Old 05-17-2017, 07:39 PM   #1
Junior Member
Location: Australia

Join Date: May 2017
Posts: 1
Default IDBA 'std::logic_error'

Hi, I am trying to merge paired-end illumina reads (read length: 101) .

I am using the command:
fq2fa --merge --filter sample_1.fq sample_2.fq sample.fa

I am getting:
terminate called after throwing an instance of 'std::logic_error'
what(): SequenceWriter::SequenceWriter() ostream is invalid
Aborted (core dumped)

I have done this with my previous batch of samples, and was able to merge the paired-end reads and then assembled them successfully. Since then my computer was wiped and so I have re-installed idba-master. Since re-installing, any command I use results in the same error.
I even tried to re-assemble a merged paired-end fasta file from my previous sequencing batch. The same error is occurring, even though I had successfully assembled it in the past.

Can anyone please help.

TimG is offline   Reply With Quote

idba, idba-ud, metagenomics, paired-end

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