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  • RNAseq by PacBio

    Hi, all
    I was wondering if PacBio is an idea platform for RNAseq due to its long read length.
    Or Is it good to combine PacBio data with illumina's?
    Thanks

  • #2
    For looking at isoforms of a small set of genes, almost definitely, pending you can make ds cDNA long enough.

    Almost certainly not enough tput to be useful for whole transcriptome.

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    • #3
      PacBio is also going to be more expensive overall. Error rate with PacBio will cause problems unless you have other supplemental data (illumina, Solid etc) or a good reference sequence.

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