I have used soapaligner to align my reads and converted those reads to SAM format using SAMTOOLS..I want to run mrfQuantifier of RSEQtools on these aligned reads but there is some problem with sam2mrf conversion. I am not clear about the command which I can use, in some earlier thread I saw cat command being used but it is generating an executable file..Kindly help if anyone has worked earlier with RSEQtools
THanks.
THanks.
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