Nice to meet you all!
I want to extract a consensus transcriptome for 4 species. Now I have de novo assemblied all transcripts for 4 species. I want to use Clust-Omega to finish Multiple Sequences Alignment, but I can not find how to use Clust-Omega (I have installed in on my Linux by compliling source code).
I find this in clustalo --help:
clustalo -i my-in-seqs.fa -o my-out-seqs.fa -v
But it seems that only one .fasta can be inputed into program, but I have four. Does it means that I have to combined all fasta files together ? if it's so, I don't know how clusto will seperated each specie.
I want to extract a consensus transcriptome for 4 species. Now I have de novo assemblied all transcripts for 4 species. I want to use Clust-Omega to finish Multiple Sequences Alignment, but I can not find how to use Clust-Omega (I have installed in on my Linux by compliling source code).
I find this in clustalo --help:
clustalo -i my-in-seqs.fa -o my-out-seqs.fa -v
But it seems that only one .fasta can be inputed into program, but I have four. Does it means that I have to combined all fasta files together ? if it's so, I don't know how clusto will seperated each specie.
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