I am trying to use SRA to download public data SRR2129993. Running 'fastq-dump SRR2129993 -X 5 -Z' i get the output i expect - 5 spots read and write. So i assume that it is properly configured. But when i run 'prefetch --max-size 999Gb SRR2129993', i get the following error:
I.e. it started downloading and I saw that size of file was increasing, but suddenly error occured and it stopped. I have enough disk space to download it and have no i-net connection issues. Have anyone faced this problem before? Is there any way to download accession by parts - trying to get a whole file in a single run i get error in the middle of the proccess which remove all data downloaded, may be if i can download it by parts it wil solve my problems.
Code:
Maximum file size download limit is 1,047,527,424KB 2016-04-07T13:00:45 prefetch.2.5.7: 1) Downloading 'SRR2129993'... 2016-04-07T13:00:45 prefetch.2.5.7: Downloading via http... 2016-04-07T20:18:10 prefetch.2.5.7 int: incomplete while reading file within network system module - [url]http://sra-download.ncbi.nlm.nih.gov/srapub/SRR2129993:[/url] Cannot KFileRead 2016-04-07T20:18:13 prefetch.2.5.7: 1) failed to download SRR2129993
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