Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Help with converting files to BEAGLE format

    Hello,
    I am a clinical geneticist (MD) with little bioinformatics background, but I am trying to teach myself how to analyze my research exome data by myself... I don't want to miss out on the fun!
    I have been able to convert my .vcf files to ped/map files (plink format).
    I am now trying to convert either my vcf file to Beagle format or my ped/map files to Beagle format files.
    I am encountering all sorts of problems.
    I've tried using a germline utility with Beagle, but to no avail.
    I was wondering if someone could give me simple- step-by-step instructions on how to do this.
    I would really appreciate it!
    Thanks.

  • #2
    Hi BW22,

    It's certainly not a step by step answer but I stumbled across this whilst looking for something else and remembered your question:



    Requires you to install vcftools of course, but maybe someone else can give step by step instructions.
    Nicholas Blackburn | PhD Candidate
    Tasmanian Inherited Cancer Centre
    Menzies Research Institute Tasmania
    Hobart TAS 7000 | www.menzies.utas.edu.au

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Recent Advances in Sequencing Analysis Tools
      by seqadmin


      The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
      05-06-2024, 07:48 AM
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Yesterday, 06:35 AM
    0 responses
    15 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-09-2024, 02:46 PM
    0 responses
    21 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-07-2024, 06:57 AM
    0 responses
    18 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 05-06-2024, 07:17 AM
    0 responses
    19 views
    0 likes
    Last Post seqadmin  
    Working...
    X