SEQanswers

Go Back   SEQanswers > Applications Forums > Clinical Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
The problem with sensitivity analysis of somatic variant caller PKhongthon Illumina/Solexa 0 04-14-2016 10:18 PM
Seeking resources for PE RNAseq somatic variant calling umn_bist Bioinformatics 0 02-09-2016 12:48 PM
Looking for tools for calling snv and indel(Somatic Variant) fabrice Bioinformatics 1 06-13-2014 10:29 AM
Somatic variant caller with no normal control linda_kohn Bioinformatics 0 09-11-2013 04:04 AM
Option "calmd"; Reporting indels and Somatic mutations for Whole Exome Seq data: angerusso Bioinformatics 0 01-10-2012 03:32 PM

Reply
 
Thread Tools
Old 09-07-2016, 10:45 AM   #1
GERALD
Member
 
Location: San Francisco, CA

Join Date: Jun 2010
Posts: 19
Default Somatic Variant Reporting

Our department is looking for a software solution to support analysis and reporting of somatic cancer variants (currently panels, but eventually exomes). It looks like most of the currently available reporting software (Cartagenia, Next Code) is designed to support germline analysis (rare disease analysis). We would be interested in any software packages that are available to specifically support somatic cancer variant analysis. Know of any?
GERALD is offline   Reply With Quote
Old 09-09-2016, 05:36 AM   #2
GOtest
Junior Member
 
Location: Cleveland

Join Date: Sep 2016
Posts: 1
Default

Gerald -- I work at GenomOncology. We offer a Clinical Workbench, installed within your firewall, where the input is the BAM/VCF and QC files to enable professional interpretation (in a high-assurance fully traceable and audit-able manner) and generate a clinically actionable report in less than 20 minutes from start to finish. The report is template driven and 100% customizable to your labs needs.

Vanderbilt’s MyCancerGenome, plus FDA, NCCN and ACSO guidelines, drive the clinical interpretation and also allows the lab to add relevant Clinical Trials and content. We have an exclusive license for MyCancerGenome and a solid relationship with the Vanderbilt team. If your institution has its own rules, those can easily be added too.

Feel free to message me -- I'm happy to talk further.
GOtest is offline   Reply With Quote
Old 02-07-2017, 06:47 AM   #3
shadowkatz
Junior Member
 
Location: Arizona

Join Date: May 2009
Posts: 1
Default WuXi NextCODE support somatic cancer

Hi Gerald, I am with WuXi NextCODE. We do support somatic cancer. If you want a demo, please let me know. I am happy to walk you through it.
shadowkatz is offline   Reply With Quote
Reply

Tags
cancer bioinformatics, reporting variants, somatic mutations

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:36 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO