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Old 07-17-2017, 03:33 AM   #1
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Location: Edinburgh

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Default adding extra factors to topGO object


I have created a topGO object using a list of DMRs from BS-seq analysis and wondered if anyone knew of a good way to add whether it is a hypo or hyper methylated region. Can you just add this as a factor? Or would it just be easier to split the DMRs into hypo and hyper groups and perform the analysis separately? I know there is a method to add p-values as a factor so this should be simple in theory but I'm not sure the software lends itself to this analysis.

Any help is appreciated.

MariannePearson is offline   Reply With Quote

dmr, methylation, topgo

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