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Old 07-17-2017, 03:33 AM   #1
MariannePearson
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Location: Edinburgh

Join Date: Jul 2017
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Default adding extra factors to topGO object

Hello,

I have created a topGO object using a list of DMRs from BS-seq analysis and wondered if anyone knew of a good way to add whether it is a hypo or hyper methylated region. Can you just add this as a factor? Or would it just be easier to split the DMRs into hypo and hyper groups and perform the analysis separately? I know there is a method to add p-values as a factor so this should be simple in theory but I'm not sure the software lends itself to this analysis.

Any help is appreciated.

Thanks,
Marianne
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