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Sorting Amino Acid Sequences
I have a a set of three fasta files with amino acid sequences. Can you suggest me scripts to separate out sequences that are common, and as well that are different among each of the three fasta files?
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Last edited by satishg; 08-25-2015, 11:39 AM. -
Look into CD-HIT (http://weizhongli-lab.org/cdhit_suite/cgi-bin/index.cgi). Depending on how large your files are you may need to contact the lab. -
Thanks ! I was able to install it locally. I will explore it.Comment
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Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM -
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