Hi,
I have been trying for a while to submit our WGS genome data to NCBI.
I had to overcome some obstetricals, and I'm almost there, but this last obstetrical seems to be to big for me.
I have to make a AGP file witch describes the assembly of a larger sequence object (scaffolds) from smaller objects (contigs).
We have some sort of script to generate the AGP file. But it is't working correctly. And my expertise isn't not that great to make it work.
So my question to the community is: Who has a working script and is willing to help to improve mine or share theirs?
Thank you in advance!
I have been trying for a while to submit our WGS genome data to NCBI.
I had to overcome some obstetricals, and I'm almost there, but this last obstetrical seems to be to big for me.
I have to make a AGP file witch describes the assembly of a larger sequence object (scaffolds) from smaller objects (contigs).
We have some sort of script to generate the AGP file. But it is't working correctly. And my expertise isn't not that great to make it work.
So my question to the community is: Who has a working script and is willing to help to improve mine or share theirs?
Thank you in advance!
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