SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
EdgeR GLM linear regression of time series bsuac6 Bioinformatics 3 03-28-2013 03:50 PM
GLM in DESeq SMcTaggart Bioinformatics 3 12-11-2011 12:02 AM
Multiple DGE libraries comparison. (EdgeR baySeq DESeq) Roman Bruno Bioinformatics 52 11-29-2011 07:39 AM
DESeq and edgeR up/down regulation murphycj Bioinformatics 7 09-21-2011 08:09 AM
edgeR vs DESeq vs bayseq Azazel Bioinformatics 1 10-07-2010 08:11 AM

Reply
 
Thread Tools
Old 08-03-2011, 11:14 AM   #1
Hilary April Smith
Member
 
Location: USA

Join Date: Jul 2011
Posts: 22
Default BaySeq vs GLM in EdgeR and DESeq

Hi,
I recently saw that the capacity for generalized linear models have been added to some of the bioconductor packages like EdgeR. I know that previously BaySeq was the only option for going beyond pairwise comparisons, and was wondering if there is any work to compare the results of using BaySeq vs. the GLM (ideally with the use of biological replicates). I'm a student and new to the forum (but looking for options for analyzing an experiment) and so I apologize in advance if I missed another thread that addressed this; my literature searches so far haven't come up with much on the newer GLM implementations for RNA-Seq. Thanks in advance for any advice / information you may have!
-Hilary
Hilary April Smith is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:19 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO