Hi,
I have annotated my vcf file of 20 samples from GATK's Unified genotyper using the following steps.
Unified genotyper->Variantrecalibration->Applyrecalibration->VariantAnnotator
My question is how should I proceed if I have to select rare variants (MAF<1%) for the candidate genes that I have,for each of these 20 samples?
I have annotated my vcf file of 20 samples from GATK's Unified genotyper using the following steps.
Unified genotyper->Variantrecalibration->Applyrecalibration->VariantAnnotator
My question is how should I proceed if I have to select rare variants (MAF<1%) for the candidate genes that I have,for each of these 20 samples?
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