Hello everyone,
I have around 2000 bacterial contigs obtained after de novo assembly. I want to annotate them using glimmer. Glimmer takes one contig at a time and predicts gene but I want that it should predict the genes in multi-fasta file together as there may be some genes overlapping in contigs which could be missed if I do gene prediction in one one contig separately.
Please suggest how to do this.
Hoping for a positive response
Thanks and Regards,
Neha
I have around 2000 bacterial contigs obtained after de novo assembly. I want to annotate them using glimmer. Glimmer takes one contig at a time and predicts gene but I want that it should predict the genes in multi-fasta file together as there may be some genes overlapping in contigs which could be missed if I do gene prediction in one one contig separately.
Please suggest how to do this.
Hoping for a positive response
Thanks and Regards,
Neha
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