Hi All,
I have analysed RNA-seq data and I have a bed file with genomic coordinates of mismatches to the genome (potential RNA-editing sites). I would like to know if each mismatch position is in an intron, exon, lncRNA, UTR, etc.. What is the best way to intersect my bed file with a file with genomic features (would that be a gtf file?) Thank you!
I have analysed RNA-seq data and I have a bed file with genomic coordinates of mismatches to the genome (potential RNA-editing sites). I would like to know if each mismatch position is in an intron, exon, lncRNA, UTR, etc.. What is the best way to intersect my bed file with a file with genomic features (would that be a gtf file?) Thank you!
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