Hey all,
I'm looking for some input on tuning BOWTIE for 75mer RNA-seq reads from mus - any suggestions? I'm currently allowing only unique hits, and using 68bp as seed length, but that may be too conservative.
Best,
Johannes Waage
Uni. of Copenhagen
I'm looking for some input on tuning BOWTIE for 75mer RNA-seq reads from mus - any suggestions? I'm currently allowing only unique hits, and using 68bp as seed length, but that may be too conservative.
Best,
Johannes Waage
Uni. of Copenhagen
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