Hello dear colleagues,
I have run an analysis on a Miseq system and it ended successfully.
Before the run, I have set up "generate FASTQ only" as my workflow, because I plan to use another software to align my data to a reference genome.
After the sequencing terminated, I checked my data and find out that FASTQ were not generated.
My folders look exactly like the secondary analysis was not done. So, i opened Miseq reporter to try to requeue my analysis and complete it but it was not even listed there.
In similar situations usually the error come from missing of "CompletedJobInfo.xml" and/or RTAComplete.txt
In my running folder, I found "RTAComplete.txt" and "CompletedJobInfo.xml" was missing.
I tried to copy and paste the "CompletedJobInfo.xml" from another run and reflesh the Miseq reporter, but still, it was not listed in completed run.
So, I wonder if anyone of you has undergone a similar situation and if yes how he/she managed to resolve it.
Thanks for any reply & help
I have run an analysis on a Miseq system and it ended successfully.
Before the run, I have set up "generate FASTQ only" as my workflow, because I plan to use another software to align my data to a reference genome.
After the sequencing terminated, I checked my data and find out that FASTQ were not generated.
My folders look exactly like the secondary analysis was not done. So, i opened Miseq reporter to try to requeue my analysis and complete it but it was not even listed there.
In similar situations usually the error come from missing of "CompletedJobInfo.xml" and/or RTAComplete.txt
In my running folder, I found "RTAComplete.txt" and "CompletedJobInfo.xml" was missing.
I tried to copy and paste the "CompletedJobInfo.xml" from another run and reflesh the Miseq reporter, but still, it was not listed in completed run.
So, I wonder if anyone of you has undergone a similar situation and if yes how he/she managed to resolve it.
Thanks for any reply & help
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