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  • #1

    QC for replicates in ChIP-seq

    Hi, I have some ChIP-seq data to QC.
    I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck.
    Is there a standard algorithm people use for this besides viewing the mapped tracks?
    Thanks!
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  • #2
    The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.

    -Rory

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