Hello!
I would like to get the SAM or BAM files of the events I got in the variantCalls.VCF final file. I use --processRealignedBA and then screen the bam files for the ones with the relevant window. Is there a way to produce bam files only for area I am interested in?
Also I failed to make the BAM files useful to view iGV (they look empty). Anyone has an idea why?
Thanks!
EHC
I would like to get the SAM or BAM files of the events I got in the variantCalls.VCF final file. I use --processRealignedBA and then screen the bam files for the ones with the relevant window. Is there a way to produce bam files only for area I am interested in?
Also I failed to make the BAM files useful to view iGV (they look empty). Anyone has an idea why?
Thanks!
EHC