Hi.
Does anyone know how to define the XS tag? I'm trying to use cuffinks to analyze GSNAP result? But it found many errors in the sam file: SAM error on line ***: found spliced alignment without XS attribute. I tracked these lines. They all have XS:A:?. So I guess the problem is caused by that GNSAP couldn't determine the direction value for these reads. What should I do?
Wish your help! Thanks very much!
Does anyone know how to define the XS tag? I'm trying to use cuffinks to analyze GSNAP result? But it found many errors in the sam file: SAM error on line ***: found spliced alignment without XS attribute. I tracked these lines. They all have XS:A:?. So I guess the problem is caused by that GNSAP couldn't determine the direction value for these reads. What should I do?
Wish your help! Thanks very much!
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