Hi all and thanks for any insight you have in advance.
I am trying to assemble a fungal genome of approximately 42Mb in size. I have reads from an Ion Torrent run and some old data our lab had from a PacBio sequencing in fastq format.
I was wondering what would be a good assembly program to start attempting. I have heard that SPAdes is an option though the genome size is larger than bacteria. Falcon has also been suggested along with PBcR.
Any hints and help would be extremely appreciated.
I am trying to assemble a fungal genome of approximately 42Mb in size. I have reads from an Ion Torrent run and some old data our lab had from a PacBio sequencing in fastq format.
I was wondering what would be a good assembly program to start attempting. I have heard that SPAdes is an option though the genome size is larger than bacteria. Falcon has also been suggested along with PBcR.
Any hints and help would be extremely appreciated.
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